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2012 MRS Fall Meeting Logo2012 MRS Fall Meeting & Exhibit

November 25-30, 2012 | Boston
Meeting Chairs: Chennupati Jagadish, Thomas Lippert, Amit Misra, Eric Stach, Ting Xu

Symposium R : Fundamentals of Assembly in Biomolecular and Biomimetic Systems

2012-11-26   Show All Abstracts

Symposium Organizers

Sungwook Chung, Lawrence Berkeley National Laboratory
Nicole F. Steinmetz, Case Western Reserve University
Dirk Zahn, Friedrich-Alexander-Universitaet Erlangen-N#65533;rnberg
Raymond W. Friddle, Sandia National Laboratories

Symposium Support

Agilent Technologies
Carl Zeiss Microscopy Inc.
FEI Company
Lawrence Berkeley National Laboratory
Thermo Fisher Scientific
VWR International, LLC
R2: Assembly of Biological Macromolecules II: Protein Building Blocks
Session Chairs
Sungwook Chung
Monday PM, November 26, 2012
Sheraton, 2nd Floor, Liberty Ballroom

2:30 AM - *R2.01
High-speed and High Resolution AFM Monitors Dynamic Membrane Protein Interactions

Ignacio Casuso 1 Adai Colom 1 Mohamed Husain 1 Simon Scheuring 1

1INSERM / Aix-Marseille Universitamp;#233; Marseille France

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3:00 AM - R2.02
Osteoblasts and Fibroblasts Behaviour on Zeolite-patterned Silicon Substrates

Salih Kaan Kirdeciler 1 Cathy Tkaczyk 3 Burcu Akata 1 2 Maryam Tabrizian 3

1Middle East Technical University Ankara Turkey2Middle East Technical University Ankara Turkey3McGill University Montreal Canada

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3:15 AM - R2.03
Directed Patterning of the Self-assembled Silk-elastin-like Nanofibers Using Nanomechanical Stimulus

Nitinun Varongchayakul 1 Sara Johnson 1 Sunhee Lee 3 Joseph Cappello 2 Hamid Ghanderhari 2 Sang Bok Lee 1 3 Santiago Solares 1 Joonil Seog 1

1University of Maryland College Park USA2University of Utah Salt Lake City USA3Korea Advanced Institute of Science and Technology Daejeon Republic of Korea

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3:30 AM - R2.04
Structure and Mechanics of Type I Collagen Heterotrimer and Homotrimer Microfibrils: Molecular Origin of Brittle Bone Disease

Shu-Wei Chang 1 Sandra J Shefelbine 2 Markus J Buehler 1

1MIT Cambridge USA2Imperial College London United Kingdom

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3:45 AM - R2
BREAK

4:15 AM - *R2.05
Protein Conformational Flexibility as a Prerequisite for the Formation of Ordered Solid Phases

Peter Vekilov 1 2 Vassiliy Lubchenko 2 Ho Yin Chan 2 Maria Vorontsova 1 Weichun Pan 1

1University of Houston Houston USA2University of Houston Houston USA

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4:45 AM - R2.06
Nanomechanical Analysis of Tropoelastin Identifies Key Structural Region in Tropoelastin Assembly: Experiment and Simulation

Anna Tarakanova 1 Anthony Weiss 2 Markus J. Buehler 1

1MIT Cambridge USA2University of Sydney Sydney Australia

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5:00 AM - R2.07
Shear-induced Self-assembly of Native and Reconstituted Silkworm Silk Revealed at the Molecular Scale by Atomic Force Microscopy

Sean R Koebley 1 Daniel T Thorpe 1 Imke Greving 2 Fritz Vollrath 2 Hannes C Schniepp 1

1The College of William amp; Mary Williamsburg USA2University of Oxford Oxford United Kingdom

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5:15 AM - R2.08
Differential Contributions of Conformation and Domain Unfolding to Properties of Fibronectin Nanotextiles

Leila Deravi 1 Tianxiang Su 2 Jeffrey Paten 3 Jeffrey Ruberti 3 Katia Bertoldi 2 Kevin Kit Parker 1

1Disease Biophysics Group, Wyss Institute for Biologically Inspired Engineering, School of Engineering and Applied Sciences, Harvard University Cambridge USA2School of Engineering and Applied Sciences, Harvard University Cambridge USA3Department of Mechanical and Industrial Engineering, Northeastern University Boston USA

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5:30 AM - R2.09
Elucidation of Domains in Reflectin Responsible for Optical Scattering Behavior

Patrick B. Dennis 1 Benjamin Gough 1 Kristi Singh 1 Wendy J Crookes-Goodson 1 Rajesh R Naik 1

1Wright Patterson Air Force Base Wright-Patterson AFB USA

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R1: Assembly of Biological Macromolecules I: Protein Building Blocks
Session Chairs
Jim De Yoreo
Monday AM, November 26, 2012
Sheraton, 2nd Floor, Liberty Ballroom

9:30 AM - *R1.01
Protein Nanofibrils

Tuomas Knowles 1

1University of Cambridge Cambridge United Kingdom

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10:00 AM - R1.02
On the Assembly of Kinesin-based Nanotransport Systems

Daniel Oliveira 1 Mitsuo Umetsu 1 2 Tadafumi Adschiri 1 Winfried Teizer 1 3

1Tohoku University Sendai Japan2Tohoku University Sendai Japan3Texas Aamp;M College Station USA

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10:15 AM - R1.03
From Triskelion to Aggregate to Assembly: Principles of Protein Self-assembly and Remodeling

Alia P Schoen 1 Shafigh Mehraeen 4 Arunagirinathan Manickam Adhimoolam 1 Kelly N.L. Huggins 1 Andrew Spakowitz 3 2 Sarah C Heilshorn 1 2

1Stanford University Stanford USA2SLAC National Accelerator Laboratory Menlo Park USA3Stanford University Stanford USA4Stanford University Stanford USA

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10:30 AM - R1
BREAK

11:00 AM - *R1.04
Pathways of Matrix Protein Self-assembly and Directed Nucleation

Jim De Yoreo 1 Jinhui Tao 1 Sungwook Chung 2 Andrzej Wierzbicki 3 Seong-Ho Shin 1 Babak Sanii 1 Luis Comolli 4

1LBNL Berkeley USA2LBNL Berkeley USA3U. South Alabama Mobile USA4LBNL Berkeley USA

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11:30 AM - R1.05
Recent Advances and New Challenges in S-layer Protein Self-assembly

Dietmar Pum 1 Uwe B. Sleytr 1

1University of Natural Resources and Life Sciences Vienna Austria

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11:45 AM - R1.06
Direct Observation of Kinetic Traps Associated with Structural Transformations during S-layer Assembly

Sungwook Chung 1 2 Seong-Ho Shin 1 3 5 Babak Sanii 1 3 Luis Comolli 4 Carolyn Bertozzi 1 3 5 Jim De Yoreo 1 3

1Lawrence Berkeley Natl Lab Berkeley USA2Lawrence Berkeley Natl Lab Berkeley USA3Lawrence Berkeley Natl Lab Berkeley USA4Lawrence Berkeley Natl Lab Berkeley USA5University of California Berkeley USA

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12:00 PM - R1.07
Mechanisms and Dynamics of Collagen Assembly on Mica Surface

Jinhui Tao 1 Debin Wang 1 Magali Lingenfelder 1 Raymond Friddle 1 Jim De Yoreo 1

1Lawrence Berkeley National Laboratory Berkeley USA

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12:15 PM - *R1.08
High-speed Atomic Force Microscopy Capable of Filming Dynamic Processes in Biomolecule Self-assembly

Toshio Ando 1

1Kanazawa University Kanazawa Japan

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12:45 PM - R1.09
In-situ Modification of Bacterial Cellulose for Enhanced Liquid Crystallinity

Mudrika Khandelwal 1 Alan H Windle 1 Nadine Hessler 2

1University of Cambridge Cambridge United Kingdom2Friedrich Schiller University Jena Germany

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2012-11-27   Show All Abstracts

Symposium Organizers

Sungwook Chung, Lawrence Berkeley National Laboratory
Nicole F. Steinmetz, Case Western Reserve University
Dirk Zahn, Friedrich-Alexander-Universitaet Erlangen-N#65533;rnberg
Raymond W. Friddle, Sandia National Laboratories

Symposium Support

Agilent Technologies
Carl Zeiss Microscopy Inc.
FEI Company
Lawrence Berkeley National Laboratory
Thermo Fisher Scientific
VWR International, LLC
R4: Assembly of Biological Macromolecules IV: Peptides and Peptoids
Session Chairs
Bogdan Dragnea
Tuesday PM, November 27, 2012
Sheraton, 2nd Floor, Liberty Ballroom

2:30 AM - *R4.01
Directed Assembly on the Nano-scale Using beta;-Peptide Oligomers

Claribel Acevedo-Velez 1 C. Derek Ma 1 Samuel H. Gellman 2 Nicholas L. Abbott 1

1University of Wisconsin-Madison Madison USA2University of Wisconsin-Madison Madison USA

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3:00 AM - R4.02
Peptides Assemblies on Graphene Edges and Planes: Binding Studies on CVD Grown Graphene

Steve S Kim 1 Yen Ngo 1 Zhifeng Kuang 1 Sharon E Jones 1 Barry L Farmer 1 Rajesh R Naik 1

1Air Force Research Labs Dayton USA

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3:15 AM - R4.03
On the Relations between the Structure of Self-assembled Peptide Nanostructures and Electronic Conductance through Them

Nurit Ashkenasy 1 Moran Amit 1 Ian William Hamley 2

1Ben Gurion University Beer Sheva Israel2University of Reading Reading United Kingdom

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3:30 AM - R4.04
Determining Design Principles for Self-assembling Peptide Hydrogels Used in Tissue Engineering: The Effect of Net Peptide Charge

Steven Maude 1 Irina A. Nyrkova 4 Eileen Ingham 2 3 Amalia Aggeli 1

1University of Leeds Leeds United Kingdom2University of Leeds Leeds United Kingdom3University of Leeds Leeds United Kingdom4CNRS - UPR 22 Strasbourg France

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3:45 AM - R4
BREAK

4:15 AM - *R4.05
The Adaptation of Protein Design Rules to the Folding of Non-natural Polymers

Ronald Zuckermann 1

1Lawrence Berkeley Lab Berkeley USA

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4:45 AM - R4.06
The Controls on Assembly of Peptide-mimetics at Interfaces

Chun-Long Chen 1 Raymond W Friddle 2 Debin Wang 1 Ronald N Zuckermann 1 James J DeYoreo 1

1Lawrence Berkeley National Laboratory Berkeley USA2Sandia National Laboratories Livermore USA

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5:00 AM - R4.07
Surface Diffusion-mediated Coil Formation of Gold-binding Peptide on Au(111)

Saide Zeynep Nergiz 1 Joseph M. Slocik 2 Rajesh R. Naik 2 Srikanth Singamaneni 1

1Washington University in St. Louis Saint Louis USA2Air Force Research Laboratory Wright-Patterson Air Force Base USA

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5:15 AM - R4.08
Gold Nanoparticle Mediated Switching of Peptide Chirality

Joseph Slocik 1 Patrick Dennis 1 Rajesh Naik 1

1Air Force Research Lab Dayton USA

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R5: Poster Session
Session Chairs
Nicole Steinmetz
Tuesday PM, November 27, 2012
Hynes, Level 2, Hall D

9:00 AM - R5.01
Understanding How Hard-soft Interfaces Control the Growth of Complex Structures

John Harding 1 Maria Romero-Gonzalez 2 Steve Banwart 2 James Elliott 3 P. Mark Rodger 4 Mike Allen 5 Tiffany Walsh 6 Fiona Meldrum 7 Roland Kroger 8 Dorothy Duffy 9 Susan Stipp 10 Karina Sand 10

1University of Sheffield Sheffield United Kingdom2University of Sheffield Sheffield United Kingdom3University of Cambridge Cambridge United Kingdom4University of Warwick Coventry United Kingdom5University of Warwick Coventry United Kingdom6Deakin University Melbourne Australia7University of Leeds Leeds United Kingdom8University of York York United Kingdom9University College London London United Kingdom10University of Copenhagen Copenhagen Denmark

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9:00 AM - R5.02
Use of Molecular Modeling for Design of Novel Biomimetic Organically Modified Nanoclay-hydroxyapatite -polymer Biomaterials

Anurag Sharma 1 Dinesh R Katti 1 Kalpana S Katti 1

1North Dakota State University Fargo USA

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9:00 AM - R5.03
Charge-dependent Nano-mesoscale Self-organization Processes of Amphiphilic Peptides

Giovanni Marletta 1 Grazia Maria Lucia Messina 1 Monica Dettin 2

1University of Catania Catania Italy2University of Padova Padova Italy

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9:00 AM - R5.04
DNA-aptamers as Nanovalves in Particles and Membranes

Maria Belen Serrano Santos 1 Thomas Schaefer 1 2

1University of the Basque Country Donostia-San Sebastiamp;#225;n Spain2Basque Foundation for Science Bilbao Spain

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9:00 AM - R5.05
Template-directed Synthesis and Hierarchical Assembly of Nucleotidomimetic Polymers

Amanda B. Marciel 1 Charles M. Schroeder 1 2 3

1UIUC Urbana USA2UIUC Urbana USA3UIUC Urbana USA

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9:00 AM - R5.06
Theoretical Study on the Mechanism of Oxygen Evolving Center in PSII

Shin Nakamura 1 Katsushi Fujii 2 Makoto Hatakeyama 1 Hiroya Nakata 1 Waka Uchida 1 Masamitsu Wakabayashi 1 Koji Ogata 1 Satoshi Yokojima 1

1RIKEN Wako Japan2The University of Tokyo Tokyo Japan

Show Abstract

9:00 AM - R5.07
Laser-induced Molecular Self-assembly of Sophorolipid into Highly Spherical Auto-fluorescent Nanostructures and Magnetic Nanoparticle Loading for Imaging and Therapeutics

Pradeep Kumar Singh 1 2 Ruchira Mukherji 2 Kasturi Joshi-Navare 2 Asmita A Prabhune 2 Satish B Ogale 1

1National Chemical Laboratory Pune India2National Chemical Laboratory, Pune, India Pune India

Show Abstract

9:00 AM - R5.08
Investigation of Relationship between Surface Wettability and Inhibition of Protein Adsorption for Layer-by-layer Assembly Biological Thin Film

Hidefumi Nara 1 Sae-Hoon Kim 2 Kyu-Hong Kyung 1 Seimei Shiratori 1

1Keio. University Yokohama Japan2Gangneung Wonju National Univ Gangneung Republic of Korea

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9:00 AM - R5.10
Molecular Mechanism of Force Induced Stabilization of Collagen against Enzymatic Breakdown

Shu-Wei Chang 1 Brendan P Flynn 2 Jeffrey W Ruberti 2 Markus J Buehler 1

1MIT Cambridge USA2Northeastern University Boston USA

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9:00 AM - R5.11
Synthesizing of Liposome Reinforced with Cholesterol and Application to Transmission Electron Microscopy Observation

Marina Kamogawa 1 Junichi Shimanuki 2 Takashi Harumoto 1 Makoto Yuasa 3 Takashi Ishiguro 1

1Tokyo University of Science Noda Japan2NISSAN ARC, LTD. Yokosuka Japan3Tokyo University of Science Noda Japan

Show Abstract

9:00 AM - R5.12
Fabrication and Characterization of Biomimetic Collagen-apatite Scaffolds

Zengmin Xia 1 Mei Wei 1

1University of Connecticut Storrs USA

Show Abstract

9:00 AM - R5.13
Hydrolysis of Artificial Cell Membrane Using Phospholipase Containing Melittin

Jinyoung Lee 1 Ju Kyoung Lee 2 Bae Ho Park 2 Ahmed Busnaina 1 HeaYeon Lee 1 2

1Northeastern University Boston USA2Konkuk University Seoul Republic of Korea

Show Abstract

9:00 AM - R5.14
Surface Chemistry of Functional Nanoparticles for Self-assembling

Thomas Bizien 2 1 Cyrille Hamon 1 Marie Postic 2 Elsa Mazari 3 Etienne Henry 2 Aurelien Dif 1 Pascale Even-Hernandez 1 Charlie Gosse 3 Franck Artzner 2 Valerie Marchi Artzner 1

1University rennes 1 Rennes France2Universitamp;#233; Rennes 1 Rennes France3CNRS Marcoussis France

Show Abstract

R3: Assembly of Biological Macromolecules III: Virus Building Blocks
Session Chairs
Nicole Steinmetz
Tuesday AM, November 27, 2012
Sheraton, 2nd Floor, Liberty Ballroom

9:30 AM - *R3.01
Particle-templated Assembly of a Non-icosahedral Virus Protein Cage: The Case of HIV 1 Gag

Bogdan Dragnea 1

1Indiana University Bloomington USA

Show Abstract

10:00 AM - R3.02
Discovery of Enzyme-mimicking Peptides with Hydrogel-based Peptide Library and Room Temperature Growth of ZnO by Catalytic Esterification of Peptide Assembly

Yoshiaki Maeda 1 Zengyan Wei 1 Yasuhiro Ikezoe 1 Louise Birchall 2 Rein V Ulijn 2 Hiroshi Matsui 1

1City University of New York, Hunter College New York USA2University of Strathclyde Glasgow United Kingdom

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10:15 AM - R3.03
Mussel-inspired Sticky Viruses: Facile Surface Immobilization for Gene Delivery

Haeshin Lee 1 2 Jae-Hyung Jang 3

1KAIST Daejeon Republic of Korea2KAIST Daejeon Republic of Korea3Yonsei University Seoul Republic of Korea

Show Abstract

10:30 AM - R3
BREAK

11:00 AM - R3.04
Enhanced Tumor Penetration and Retention of Filamentous Viral Nanoparticles

Sourabh Shukla 1 Nicole F Steinmetz 1 2 3

1Case Western Reserve University Cleveland USA2Case Western Reserve University Cleveland USA3Case Western Reserve University Cleveland USA

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11:15 AM - R3.05
Biotemplated Copper Sulfide Nanowires from M13 Bacteriophage

Mohammed Shahriar Zaman 1 Elaine D. Haberer 1 2

1University of California Riverside USA2University of California Riverside USA

Show Abstract

11:30 AM - R3.06
Mesoscale-hierarchical Patterning Using Meniscus Forces Driven Coalescence of the M13 Phage

Kwang Heo 1 2 Jin-Woo Oh 1 2 Seung-Wuk Lee 1 2

1Lawrence Berkeley National Laboratory (LBNL) Berkeley USA2University of California, Berkeley Berkeley USA

Show Abstract

11:45 AM - R3.07
Bacteriophage lambda; for Material Dissociation and Assembly

Stanley Brown 1

1University of Copenhagen Copenhagen Denmark

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12:00 PM - R3.08
A Shape Shifting Viral Nanoparticle as Candidate MRI Contrast Agent

Michael A Bruckman 1 Nicole F Steinmetz 1

1Case Western Reserve University Cleveland USA

Show Abstract

12:15 PM - *R3.09
How Simple Can a Model of an Empty Viral Capsid Be? The Role of Charge Distributions in Viral Capsids

Rudolf Podgornik 1 2

1J. Stefan Institute Ljubljana Slovenia2University of Ljubljana Ljubljana Slovenia

Show Abstract

2012-11-28   Show All Abstracts

Symposium Organizers

Sungwook Chung, Lawrence Berkeley National Laboratory
Nicole F. Steinmetz, Case Western Reserve University
Dirk Zahn, Friedrich-Alexander-Universitaet Erlangen-N#65533;rnberg
Raymond W. Friddle, Sandia National Laboratories

Symposium Support

Agilent Technologies
Carl Zeiss Microscopy Inc.
FEI Company
Lawrence Berkeley National Laboratory
Thermo Fisher Scientific
VWR International, LLC
R7: Theoretical and Computational Topics in Biomolecular Assembly II
Session Chairs
Steve Whitelam
Wednesday PM, November 28, 2012
Sheraton, 2nd Floor, Liberty Ballroom

2:30 AM - R7.01
Design and Characterization Nanostructured Biomaterials via the Self-assembly of Functionalized Nanotubes and Lipids

Meenakshi Dutt 1

1Rutgers University Piscataway USA

Show Abstract

2:45 AM - R7.02
Microfluidic Fabrication of Spider Silk Fibers with Tunable Properties: Modeling

Greta Gronau 1 Seunghwa Ryu 1 Michelle Kinahan 2 Sreevidhya Tarakkad Krishnaji 3 David L. Kaplan 3 Joyce Wong 2 Markus J. Buehler 1

1Massachusetts Institute of Technology Cambridge USA2Boston University Boston USA3Tufts University Medford USA

Show Abstract

3:00 AM - R7.03
Structure-property Relationships in Amyloid Protein Fibrils and Plaques

Max Solar 1 Markus Buehler 1

1MIT Cambridge USA

Show Abstract

3:15 AM - R7.04
Magnetotactic Bacteria and Magnetite Nano-crystal Biomineralisation: The Effect of Amino Acids on the {1 0 0} and the {1 1 1} Surface

Amy Monnington 1 David Cooke 1

1University of Huddersfield Huddersfield United Kingdom

Show Abstract

3:30 AM - R7
BREAK

4:00 AM - R7.05
Designing Synthetic Materials on a Molecular Level with Biologically-inspired Mechanical Properties

Charles E Sing 1 2 Alfredo Alexander-Katz 1

1MIT Cambridge USA2Northwestern University Evanston USA

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4:15 AM - R7.06
Blood Clotting-inspired Polymer-colloid Composites: Assembly and Properties

Hsieh Chen 1 Roozbeh Dargazany 1 Alfredo Alexander-Katz 1

1MIT Cambridge USA

Show Abstract

R6: Theoretical and Computational Topics in Biomolecular Assembly I
Session Chairs
Steve Whitelam
Wednesday AM, November 28, 2012
Sheraton, 2nd Floor, Liberty Ballroom

9:30 AM - *R6.01
Materials by Design

Markus J Buehler 1

1MIT Cambridge USA

Show Abstract

10:00 AM - R6.02
Using Molecular Dynamics Simulations to Understand and Predict Peptide Self-assembly

Pim Frederix 1 2 Rein V. Ulijn 2 Neil T. Hunt 1 Tell Tuttle 2

1University of Strathclyde Glasgow United Kingdom2University of Strathclyde Glasgow United Kingdom

Show Abstract

10:15 AM - R6.03
Coarse-grained Brownian Dynamics Simulations of Polymer Mediated Capsid Assembly

Jason Perlmutter 1 Michael Hagan 1

1Brandeis University Waltham USA

Show Abstract

10:30 AM - R6
BREAK

11:00 AM - *R6.04
Design Rules for the Self-assembly of a Protein Crystal

Stephen Whitelam 1 Thomas K Haxton 1

1Lawrence Berkeley National Laboratory Berkeley USA

Show Abstract

11:30 AM - R6.05
Effect of Interaction Specificity on the Phase Diagram and the Nucleation Dynamics of Patchy Particle Models

Diana Fusco 1 Patrick Charbonneau 1

1Duke University Durham USA

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11:45 AM - R6.06
Polyelectrolyte Interactions in Bulk and at the Electrified Interface: A Simulation Study

Maria Sammalkorpi 1 Paul Van Tassell 2

1Aalto University Helsinki Finland2Yale